Contents:

• Installation
  • Stable release
  • Run the test data
• Running the Pipeline
  • Activating the Pipeline
  • To get help
  • General pipeline flowchart
  • Usage Examples
  • Checking error logs
• Output
• Key output dir tree
• Output Examples
  • CGmap file from cgmaptools
  • Restrict to CG context
  • Merge symetrical CpG lines (updated CGmap file)
  • Identify ICR hotspot from each tissue or gamet cells
  • Merged bed file
  • Union bed file
  • Count putative ICR in all tissue (Final file)
• Help
  • Frequently Asked Questions
• puticr
  • puticr package
• Credits
  • Development Lead
  • Contributors
• Contributing
  • Types of Contributions
  • Get Started!
  • Pull Request Guidelines
  • Tips
  • Deploying
• History
  • 0.1.0 (2018-12-18)
• License